tcpl: ToxCast Data Analysis Pipeline

A set of tools for processing and modeling high-throughput and high-content chemical screening data. The package was developed for the the chemical screening data generated by the US EPA ToxCast program, but can be used for diverse chemical screening efforts.

Version: 3.1.0
Depends: R (≥ 3.5.0)
Imports: data.table (≥ 1.9.4), DBI, RMariaDB, numDeriv, RColorBrewer, utils, stats, methods, graphics, grDevices, sqldf, dplyr, tidyr, plotly, tcplfit2, ggplot2, gridExtra, stringr
Suggests: roxygen2, knitr, prettydoc, rmarkdown, htmlTable, testthat (≥ 3.0.0), reshape2, viridis, kableExtra, colorspace, magrittr, vdiffr
Published: 2023-10-06
DOI: 10.32614/CRAN.package.tcpl
Author: Richard S Judson [ctb, ths], Dayne L Filer [aut], Jason Brown [cre], Sarah E Davidson-Fritz ORCID iD [ctb], Madison Feshuk ORCID iD [ctb], Lori Kolaczkowski [ctb], Kurt Dunham [ctb], Carter Thunes [ctb], Ashley Ko [ctb], Todd Zurlinden [ctb], Parth Kothiya [ctb], Woodrow R Setzer [ctb], Matthew T Martin [ctb, ths], Katie Paul Friedman ORCID iD [ctb]
Maintainer: Jason Brown <brown.jason at>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: NEWS
CRAN checks: tcpl results


Reference manual: tcpl.pdf
Vignettes: Assay Registration
tcpl 2.0 Data Processing
tcpl v3.0 Data Processing
tcpl v3.0 Data Retrieval
The ToxCast(TM) Analysis Pipeline(tcpl) An R Package for Processing and Modeling Chemical Screening Data (Version 3.0)


Package source: tcpl_3.1.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): tcpl_3.1.0.tgz, r-oldrel (arm64): tcpl_3.1.0.tgz, r-release (x86_64): tcpl_3.1.0.tgz, r-oldrel (x86_64): tcpl_3.1.0.tgz
Old sources: tcpl archive

Reverse dependencies:

Reverse suggests: Rcurvep, tcplfit2, toxEval


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