To cite the porridge package in publications please use:

van Wieringen W, Aflakparast M (2022). porridge: Ridge-Type Estimation of a Potpourri of Models. R package version 0.3.0, https://CRAN.R-project.org/package=porridge.

Aflakparast M, de Gunst M, van Wieringen W (2018). “Reconstruction of molecular network evolution from cross-sectional omics data.” Biometrical Journal, 60(3), 547-563.

van Wieringen W (2019). “The generalized ridge estimator of the inverse covariance matrix.” Journal of Computational and Graphical Statistics, 28(4), 932-942.

van Wieringen W (2021). “Lecture notes on ridge regression.” Arxiv preprint, arXiv:1509.09169.

van Wieringen W, Chen Y (2021). “Penalized estimation of the Gaussian graphical model from data with replicates.” Statistics in Medicine, 40(19), 4279-4293.

van Wieringen W, Stam K, Peeters C, van de Wiel M (2020). “Updating of the Gaussian graphical model through targeted penalized estimation.” Journal of Multivariate Analysis, 178(article 104621).

Corresponding BibTeX entries:

  @Manual{,
    title = {porridge: Ridge-Type Estimation of a Potpourri of Models},
    author = {W.N. {van Wieringen} and M. Aflakparast},
    year = {2022},
    note = {R package version 0.3.0},
    url = {https://CRAN.R-project.org/package=porridge},
  }
  @Article{,
    title = {Reconstruction of molecular network evolution from
      cross-sectional omics data},
    author = {M. Aflakparast and M.C.M. {de Gunst} and W.N. {van
      Wieringen}},
    journal = {Biometrical Journal},
    volume = {60},
    number = {3},
    pages = {547-563},
    year = {2018},
  }
  @Article{,
    title = {The generalized ridge estimator of the inverse covariance
      matrix},
    author = {W.N. {van Wieringen}},
    journal = {Journal of Computational and Graphical Statistics},
    volume = {28},
    number = {4},
    pages = {932-942},
    year = {2019},
  }
  @Article{,
    title = {Lecture notes on ridge regression},
    author = {W.N. {van Wieringen}},
    journal = {Arxiv preprint},
    volume = {arXiv:1509.09169},
    year = {2021},
  }
  @Article{,
    title = {Penalized estimation of the Gaussian graphical model from
      data with replicates},
    author = {W.N. {van Wieringen} and Y. Chen},
    journal = {Statistics in Medicine},
    volume = {40},
    number = {19},
    pages = {4279-4293},
    year = {2021},
  }
  @Article{,
    title = {Updating of the Gaussian graphical model through targeted
      penalized estimation},
    author = {W.N. {van Wieringen} and K.A. Stam and C.F.W. Peeters and
      M.A. {van de Wiel}},
    journal = {Journal of Multivariate Analysis},
    volume = {178},
    number = {article 104621},
    year = {2020},
  }