pedtools: Creating and Working with Pedigrees and Marker Data

A comprehensive collection of tools for creating, manipulating and visualising pedigrees and genetic marker data. Pedigrees can be read from text files or created on the fly with built-in functions. A range of utilities enable modifications like adding or removing individuals, breaking loops, and merging pedigrees. Pedigree plots are produced by wrapping the plotting functionality of the 'kinship2' package. A Shiny app for creating pedigrees, based on 'pedtools', is available at <https://magnusdv.shinyapps.io/quickped>. 'pedtools' is the hub of the 'ped suite', a collection of packages for pedigree analysis. A detailed presentation of the 'ped suite' is given in the book 'Pedigree Analysis in R' (Vigeland, 2021, ISBN:9780128244302).

Version: 1.0.1
Imports: kinship2
Suggests: igraph, kableExtra, knitr, pedmut, rmarkdown, testthat
Published: 2021-06-22
Author: Magnus Dehli Vigeland ORCID iD [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland at medisin.uio.no>
License: GPL-3
URL: https://github.com/magnusdv/pedtools, https://magnusdv.github.io/pedsuite/
NeedsCompilation: no
Language: en-GB
Materials: README NEWS
CRAN checks: pedtools results

Downloads:

Reference manual: pedtools.pdf
Vignettes: Introduction to the pedtools package
Package source: pedtools_1.0.1.tar.gz
Windows binaries: r-devel: pedtools_1.0.1.zip, r-release: pedtools_1.0.1.zip, r-oldrel: pedtools_0.9.7.zip
macOS binaries: r-release (arm64): pedtools_0.9.7.tgz, r-release (x86_64): pedtools_1.0.1.tgz, r-oldrel: pedtools_1.0.1.tgz
Old sources: pedtools archive

Reverse dependencies:

Reverse depends: dvir, forrel, ibdsim2, paramlink2, pedbuildr, pedprobr, pedsuite, ribd, segregatr

Linking:

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