nucim: Nucleome Imaging Toolbox

Tools for 4D nucleome imaging. Quantitative analysis of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy. See Volker J. Schmid, Marion Cremer, Thomas Cremer (2017) <doi:10.1016/j.ymeth.2017.03.013>.

Version: 1.0.11
Depends: R (≥ 3.0.0), EBImage, bioimagetools (≥ 1.1.4)
Imports: fields, parallel, stringr
Suggests: knitr, rmarkdown, R.rsp
Published: 2021-06-10
Author: Volker Schmid [aut, cre]
Maintainer: Volker Schmid <volker.schmid at>
License: GPL-3
NeedsCompilation: no
SystemRequirements: tiff fftw libcurl openssl
Citation: nucim citation info
Materials: README NEWS
CRAN checks: nucim results


Reference manual: nucim.pdf
Vignettes: Chromatin compaction classification using DAPI intensity
Workflow for nucleome analysis of many 3D SIM images
Workflow for 3D SIM nucleome analysis
Package source: nucim_1.0.11.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): not available, r-release (x86_64): nucim_1.0.11.tgz, r-oldrel: nucim_1.0.11.tgz
Old sources: nucim archive


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