mbmixture: Microbiome Mixture Analysis

Evaluate whether a microbiome sample is a mixture of two samples, by fitting a model for the number of read counts as a function of single nucleotide polymorphism (SNP) allele and the genotypes of two potential source samples. Lobo et al. (2021) <doi:10.1093/g3journal/jkab308>.

Version: 0.4
Depends: R (≥ 3.1.0)
Imports: stats, parallel, numDeriv
Suggests: knitr, rmarkdown, testthat, devtools, roxygen2
Published: 2023-04-27
DOI: 10.32614/CRAN.package.mbmixture
Author: Karl W Broman ORCID iD [aut, cre]
Maintainer: Karl W Broman <broman at wisc.edu>
BugReports: https://github.com/kbroman/mbmixture/issues
License: MIT + file LICENSE
URL: https://github.com/kbroman/mbmixture
NeedsCompilation: no
Citation: mbmixture citation info
Materials: README NEWS
CRAN checks: mbmixture results


Reference manual: mbmixture.pdf
Vignettes: R/mbmixture User Guide


Package source: mbmixture_0.4.tar.gz
Windows binaries: r-devel: mbmixture_0.4.zip, r-release: mbmixture_0.4.zip, r-oldrel: mbmixture_0.4.zip
macOS binaries: r-release (arm64): mbmixture_0.4.tgz, r-oldrel (arm64): mbmixture_0.4.tgz, r-release (x86_64): mbmixture_0.4.tgz, r-oldrel (x86_64): mbmixture_0.4.tgz
Old sources: mbmixture archive


Please use the canonical form https://CRAN.R-project.org/package=mbmixture to link to this page.