ggmsa: Plot Multiple Sequence Alignment using 'ggplot2'

Supports visualizing multiple sequence alignment of DNA and protein sequences using 'ggplot2'. It supports a number of colour schemes, including Chemistry, Clustal, Shapely, Taylor and Zappo. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as aligning a phylogenetic tree produced by 'ggtree' with multiple sequence alignment.

Version: 0.0.6
Depends: R (≥ 3.5.0)
Imports: Biostrings, ggplot2, magrittr, tidyr, utils, stats, stringr, aplot, RColorBrewer
Suggests: ape, cowplot, ggtree (≥ 1.17.1), knitr, methods, prettydoc, rmarkdown, seqmagick
Published: 2021-02-02
Author: Guangchuang Yu ORCID iD [aut, cre], Lang Zhou [aut], Huina Huang [ctb]
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
License: Artistic-2.0
NeedsCompilation: no
Materials: NEWS
CRAN checks: ggmsa results

Downloads:

Reference manual: ggmsa.pdf
Vignettes: ggmsa
Package source: ggmsa_0.0.6.tar.gz
Windows binaries: r-devel: ggmsa_0.0.6.zip, r-release: ggmsa_0.0.6.zip, r-oldrel: ggmsa_0.0.6.zip
macOS binaries: r-release (arm64): ggmsa_0.0.6.tgz, r-release (x86_64): ggmsa_0.0.6.tgz, r-oldrel: ggmsa_0.0.6.tgz
Old sources: ggmsa archive

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