genekitr: Gene Analysis Toolkit in R

An analysis toolkit based on gene. It mainly includes five features (search, transform, analysis, visualization and export). User just needs to provide gene id ('entrez', 'symbol' or 'ensembl') then can search gene related information, transform id type, do enrichment analysis, visualize enrichment result, visualized multi-group Venn diagram and export result as excel sheets to easily share and communicate with others.

Version: 0.2.1
Depends: R (≥ 3.5)
Imports: clusterProfiler, dplyr, ggplot2, stringr, stringi, tidyr, tibble, VennDiagram
Suggests: BiocManager, cowplot, DOSE, data.table, easyPubMed, futile.logger, ggplotify, ggsci, ggupset, magrittr, msigdbr, openxlsx, RColorBrewer, rentrez, scales, stats, utils
Published: 2021-09-11
Author: Yunze Liu [aut, cre]
Maintainer: Yunze Liu <jieandze1314 at gmail.com>
BugReports: https://github.com/GangLiLab/genekitr/issues
License: GPL-3
URL: https://github.com/GangLiLab/genekitr
NeedsCompilation: no
Materials: README
CRAN checks: genekitr results

Documentation:

Reference manual: genekitr.pdf

Downloads:

Package source: genekitr_0.2.1.tar.gz
Windows binaries: r-devel: genekitr_0.2.1.zip, r-release: genekitr_0.2.1.zip, r-oldrel: genekitr_0.2.1.zip
macOS binaries: r-release (arm64): genekitr_0.2.1.tgz, r-release (x86_64): not available, r-oldrel: not available

Linking:

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