ecoregime: Analysis of Ecological Dynamic Regimes

A toolbox for implementing the Ecological Dynamic Regime framework (Sánchez-Pinillos et al., 2023 <doi:10.1002/ecm.1589>) to characterize and compare groups of ecological trajectories in multidimensional spaces defined by state variables. The package includes the RETRA-EDR algorithm to identify representative trajectories, functions to generate, summarize, and visualize representative trajectories, and several metrics to quantify the distribution and heterogeneity of trajectories in an ecological dynamic regime and quantify the dissimilarity between two or more ecological dynamic regimes. The package also includes a set of functions to assess ecological resilience based on ecological dynamic regimes (Sánchez-Pinillos et al., 2024 <doi:10.1016/j.biocon.2023.110409>).

Version: 0.2.0
Depends: R (≥ 3.4.0)
Imports: ape, data.table, ecotraj, graphics, methods, shape, smacof, stats, stringr
Suggests: knitr, plotrix, primer, RColorBrewer, rmarkdown, testthat (≥ 3.0.0), vegan
Published: 2024-04-17
DOI: 10.32614/CRAN.package.ecoregime
Author: Martina Sánchez-Pinillos ORCID iD [aut, cre, cph]
Maintainer: Martina Sánchez-Pinillos <martina.sanchez.pinillos at>
License: GPL (≥ 3)
NeedsCompilation: no
Citation: ecoregime citation info
Materials: README NEWS
CRAN checks: ecoregime results


Reference manual: ecoregime.pdf
Vignettes: Ecological Dynamic Regime framework
Ecological resilience to pulse disturbances


Package source: ecoregime_0.2.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): ecoregime_0.2.0.tgz, r-oldrel (arm64): ecoregime_0.2.0.tgz, r-release (x86_64): ecoregime_0.2.0.tgz, r-oldrel (x86_64): ecoregime_0.2.0.tgz
Old sources: ecoregime archive


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