coarseDataTools: Analysis of Coarsely Observed Data

Functions to analyze coarse data. Specifically, it contains functions to (1) fit parametric accelerated failure time models to interval-censored survival time data, and (2) estimate the case-fatality ratio in scenarios with under-reporting. This package's development was motivated by applications to infectious disease: in particular, problems with estimating the incubation period and the case fatality ratio of a given disease. Sample data files are included in the package. See Reich et al. (2009) <doi:10.1002/sim.3659>, Reich et al. (2012) <doi:10.1111/j.1541-0420.2011.01709.x>, and Lessler et al. (2009) <doi:10.1016/S1473-3099(09)70069-6>.

Version: 0.6-6
Depends: R (≥ 3.5.0)
Imports: MCMCpack, graphics, stats, methods
Suggests: markdown, knitr
Published: 2021-12-09
DOI: 10.32614/CRAN.package.coarseDataTools
Author: Nicholas G. Reich [aut, cre], Justin Lessler [aut], Andrew Azman [aut], Zhian N. Kamvar [ctb]
Maintainer: Nicholas G. Reich <nick at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Citation: coarseDataTools citation info
Materials: README ChangeLog
In views: Epidemiology, Survival
CRAN checks: coarseDataTools results


Reference manual: coarseDataTools.pdf
Vignettes: Example for estimating the case fatality ratio


Package source: coarseDataTools_0.6-6.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): coarseDataTools_0.6-6.tgz, r-oldrel (arm64): coarseDataTools_0.6-6.tgz, r-release (x86_64): coarseDataTools_0.6-6.tgz, r-oldrel (x86_64): coarseDataTools_0.6-6.tgz
Old sources: coarseDataTools archive

Reverse dependencies:

Reverse imports: EpiEstim


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