SCORPIUS: Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data

An accurate and easy tool for performing linear trajectory inference on single cells using single-cell RNA sequencing data. In addition, SCORPIUS provides functions for discovering the most important genes with respect to the reconstructed trajectory, as well as nice visualisation tools. Cannoodt et al. (2016) <doi:10.1101/079509>.

Version: 1.0.8
Depends: R (≥ 3.5.0)
Imports: dplyr, dynutils (≥ 1.0.3), dynwrap, grDevices, ggplot2 (≥ 2.0), lmds, MASS, Matrix, mclust, methods, pbapply, pheatmap, princurve (≥ 2.1.4), purrr, ranger, RANN, RColorBrewer, reshape2, stats, tidyr, TSP
Suggests: covr, knitr, rmarkdown, R.rsp, testthat (≥ 2.1.0)
Published: 2021-06-09
Author: Robrecht Cannoodt ORCID iD [aut, cre] (rcannood), Wouter Saelens ORCID iD [ctb] (zouter)
Maintainer: Robrecht Cannoodt <rcannood at>
License: GPL-3
NeedsCompilation: no
Citation: SCORPIUS citation info
Materials: README NEWS
CRAN checks: SCORPIUS results


Reference manual: SCORPIUS.pdf
Vignettes: Investigating dendritic cell maturation in dendritic cell progenitors
Trajectory inference from simulated data
Running SCOPIUS on a Seurat object


Package source: SCORPIUS_1.0.8.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): SCORPIUS_1.0.8.tgz, r-release (x86_64): SCORPIUS_1.0.8.tgz, r-oldrel: SCORPIUS_1.0.8.tgz
Old sources: SCORPIUS archive


Please use the canonical form to link to this page.