CovidMutations: Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease 2019)

A feasible framework for mutation analysis and reverse transcription polymerase chain reaction (RT-PCR) assay evaluation of COVID-19, including mutation profile visualization, statistics and mutation ratio of each assay. The mutation ratio is conducive to evaluating the coverage of RT-PCR assays in large-sized samples. Mercatelli, D. and Giorgi, F. M. (2020) <doi:10.20944/preprints202004.0529.v1>.

Version: 0.1.3
Depends: R (≥ 3.6)
Imports: ggplot2, cowplot, seqinr, stringr, grDevices, graphics, utils, ggpubr, dplyr, VennDiagram
Suggests: testthat
Published: 2020-09-18
Author: Shaoqian Ma ORCID iD [aut, cre], Yongyou Zhang ORCID iD [aut]
Maintainer: Shaoqian Ma <shaoqianma at qq.com>
BugReports: https://github.com/MSQ-123/CovidMutations/issues
License: Artistic-2.0
URL: https://github.com/MSQ-123/CovidMutations
NeedsCompilation: no
Materials: README NEWS
CRAN checks: CovidMutations results

Downloads:

Reference manual: CovidMutations.pdf
Package source: CovidMutations_0.1.3.tar.gz
Windows binaries: r-devel: CovidMutations_0.1.3.zip, r-release: CovidMutations_0.1.3.zip, r-oldrel: CovidMutations_0.1.3.zip
macOS binaries: r-release (arm64): CovidMutations_0.1.3.tgz, r-release (x86_64): CovidMutations_0.1.3.tgz, r-oldrel: CovidMutations_0.1.3.tgz

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