CRABS: Congruent Rate Analyses in Birth-Death Scenarios

Features tools for exploring congruent phylogenetic birth-death models. It can construct the pulled speciation- and net-diversification rates from a reference model. Given alternative speciation- or extinction rates, it can construct new models that are congruent with the reference model. Functionality is included to sample new rate functions, and to visualize the distribution of one congruence class. See also Louca & Pennell (2020) <doi:10.1038/s41586-020-2176-1>.

Version: 1.2.0
Depends: R (≥ 3.5.0), ggplot2
Imports: magrittr, deSolve, dplyr, tibble, colorspace, patchwork, latex2exp, tidyr, pracma, ape
Suggests: knitr, rmarkdown
Published: 2023-10-24
DOI: 10.32614/CRAN.package.CRABS
Author: Bjørn Tore Kopperud [aut, cre], Sebastian Höhna [aut], Andrew F. Magee [aut], Jérémy Andréoletti [aut]
Maintainer: Bjørn Tore Kopperud <kopperud at>
License: GPL-3
NeedsCompilation: no
Materials: README NEWS
In views: Phylogenetics
CRAN checks: CRABS results


Reference manual: CRABS.pdf


Package source: CRABS_1.2.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): CRABS_1.2.0.tgz, r-oldrel (arm64): CRABS_1.2.0.tgz, r-release (x86_64): CRABS_1.2.0.tgz, r-oldrel (x86_64): CRABS_1.2.0.tgz
Old sources: CRABS archive


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