BiBitR: R Wrapper for Java Implementation of BiBit

A simple R wrapper for the Java BiBit algorithm from "A biclustering algorithm for extracting bit-patterns from binary datasets" from Domingo et al. (2011) <doi:10.1093/bioinformatics/btr464>. An simple adaption for the BiBit algorithm which allows noise in the biclusters is also introduced as well as a function to guide the algorithm towards given (sub)patterns. Further, a workflow to derive noisy biclusters from discoverd larger column patterns is included as well.

Version: 0.3.1
Imports: stats, foreign, methods, utils, viridis, cluster, dendextend, lattice, grDevices, graphics, randomcoloR, biclust
Published: 2017-06-30
DOI: 10.32614/CRAN.package.BiBitR
Author: De Troyer Ewoud
Maintainer: De Troyer Ewoud <ewoud.detroyer at>
License: GPL-3
NeedsCompilation: no
SystemRequirements: Java
Materials: README
CRAN checks: BiBitR results


Reference manual: BiBitR.pdf


Package source: BiBitR_0.3.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): BiBitR_0.3.1.tgz, r-oldrel (arm64): BiBitR_0.3.1.tgz, r-release (x86_64): BiBitR_0.3.1.tgz, r-oldrel (x86_64): BiBitR_0.3.1.tgz
Old sources: BiBitR archive

Reverse dependencies:

Reverse depends: RcmdrPlugin.BiclustGUI
Reverse imports: miRSM


Please use the canonical form to link to this page.