CRAN Package Check Results for Package geneSignatureFinder

Last updated on 2021-09-20 16:50:32 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2014.02.17 10.22 41.98 52.20 NOTE
r-devel-linux-x86_64-debian-gcc 2014.02.17 7.28 35.23 42.51 NOTE
r-devel-linux-x86_64-fedora-clang 2014.02.17 115.90 NOTE
r-devel-linux-x86_64-fedora-gcc 2014.02.17 105.47 NOTE
r-devel-windows-x86_64 2014.02.17 9.00 103.00 112.00 NOTE
r-devel-windows-x86_64-gcc10-UCRT 2014.02.17 ERROR
r-patched-linux-x86_64 2014.02.17 9.51 40.50 50.01 NOTE
r-patched-solaris-x86 2014.02.17 267.20 NOTE
r-release-linux-x86_64 2014.02.17 7.61 40.12 47.73 NOTE
r-release-macos-arm64 2014.02.17 NOTE
r-release-macos-x86_64 2014.02.17 NOTE
r-release-windows-ix86+x86_64 2014.02.17 18.00 106.00 124.00 NOTE
r-oldrel-macos-x86_64 2014.02.17 NOTE
r-oldrel-windows-ix86+x86_64 2014.02.17 17.00 110.00 127.00 NOTE

Check Details

Version: 2014.02.17
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: 'parallel'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 2014.02.17
Check: R code for possible problems
Result: NOTE
    BICs: no visible global function definition for 'median'
    BICs: no visible global function definition for 'bw.nrd0'
    BICs: no visible global function definition for 'dnorm'
    NCPUS: no visible global function definition for 'detectCores'
    NCPUS: no visible global function definition for 'makeCluster'
    bbootstrap: no visible global function definition for 'median'
    checkGeneForSeed: no visible global function definition for 'pchisq'
    dMixNorm: no visible global function definition for 'dnorm'
    evaluateGeneSequence: no visible global function definition for
     'pchisq'
    importance: no visible global function definition for 'clusterExport'
    importance: no visible global function definition for 'clusterEvalQ'
    importance: no visible global function definition for 'parApply'
    importance: no visible global function definition for 'stopCluster'
    normalApproximation: no visible global function definition for 'sd'
    pValueFun: no visible global function definition for 'pchisq'
    pamUnbiased: no visible global function definition for 'median'
    pamUnbiased: no visible global function definition for 'bw.nrd0'
    parallelFindBest: no visible global function definition for 'parApply'
    parallelSignatureFinder: no visible global function definition for
     'pchisq'
    parallelSignatureFinder: no visible global function definition for
     'parApply'
    parallelSignatureFinder: no visible global function definition for
     'fivenum'
    puttingAllTogether: no visible global function definition for
     'makeCluster'
    puttingAllTogether: no visible global function definition for
     'dev.copy2pdf'
    puttingAllTogether: no visible global function definition for 'barplot'
    puttingAllTogether: no visible global function definition for
     'stopCluster'
    puttingAllTogether: no visible global function definition for
     'write.csv'
    removeGeneFrom: no visible global function definition for 'pchisq'
    seedsFinder: no visible global function definition for 'clusterExport'
    seedsFinder: no visible global function definition for 'clusterEvalQ'
    seedsFinder: no visible global function definition for 'parApply'
    seedsFinder: no visible global function definition for 'stopCluster'
    sequentialSignatureFinder: no visible global function definition for
     'pchisq'
    sequentialSignatureFinder: no visible global function definition for
     'fivenum'
    signatureFinder: no visible global function definition for
     'clusterExport'
    signatureFinder: no visible global function definition for
     'clusterEvalQ'
    signatureFinder: no visible global function definition for
     'stopCluster'
    testGE: no visible global function definition for 'clusterExport'
    testGE: no visible global function definition for 'parApply'
    testGE : <anonymous>: no visible global function definition for
     't.test'
    testGE: no visible global function definition for 'stopCluster'
    testGE: no visible global function definition for 't.test'
    testGE: no visible global function definition for 'median'
    Undefined global functions or variables:
     barplot bw.nrd0 clusterEvalQ clusterExport detectCores dev.copy2pdf
     dnorm fivenum makeCluster median parApply pchisq sd stopCluster
     t.test write.csv
    Consider adding
     importFrom("grDevices", "dev.copy2pdf")
     importFrom("graphics", "barplot")
     importFrom("stats", "bw.nrd0", "dnorm", "fivenum", "median", "pchisq",
     "sd", "t.test")
     importFrom("utils", "write.csv")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 2014.02.17
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     WARNING: installation-time patches will not be applied, could not get the patches index
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 2014.02.17
Check: PDF version of manual
Result: WARN
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 2014.02.17
Check: PDF version of manual without hyperrefs or index
Result: ERROR
    Re-running with no redirection of stdout/stderr.
Flavor: r-devel-windows-x86_64-gcc10-UCRT