Last updated on 2024-09-13 07:49:08 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.1.0 | 6.78 | 551.04 | 557.82 | OK | |
| r-devel-linux-x86_64-debian-gcc | 3.1.0 | 3.90 | 365.30 | 369.20 | OK | |
| r-devel-linux-x86_64-fedora-clang | 3.1.0 | 930.49 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 3.1.0 | 890.59 | OK | |||
| r-devel-windows-x86_64 | 3.1.0 | 8.00 | 306.00 | 314.00 | OK | |
| r-patched-linux-x86_64 | 3.1.0 | 7.08 | 515.83 | 522.91 | OK | |
| r-release-linux-x86_64 | 3.1.0 | 5.29 | 488.14 | 493.43 | ERROR | |
| r-release-macos-arm64 | 3.1.0 | 199.00 | OK | |||
| r-release-macos-x86_64 | 3.1.0 | 397.00 | OK | |||
| r-release-windows-x86_64 | 3.1.0 | 9.00 | 301.00 | 310.00 | OK | |
| r-oldrel-macos-arm64 | 3.1.0 | 10.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 3.1.0 | 13.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 3.1.0 | 10.00 | 420.00 | 430.00 | OK |
Version: 3.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘flextable’
Flavor: r-release-linux-x86_64
Version: 3.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [413s/225s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CodelistGenerator)
>
> test_check("CodelistGenerator")
Starting 2 test processes
[ FAIL 3 | WARN 662 | SKIP 14 | PASS 395 ]
══ Skipped tests (14) ══════════════════════════════════════════════════════════
• On CRAN (6): 'test-drugCodes.R:123:3', 'test-drugCodes.R:435:3',
'test-getICD10StandardCodes.R:84:3', 'test-getCandidateCodes.R:310:3',
'test-summariseCodeUse.R:2:1', 'test-summariseCodeUse.R:295:3'
• Sys.getenv("CDM5_POSTGRESQL_DBNAME") == "" is TRUE (1): 'test-dbms.R:292:3'
• Sys.getenv("CDM5_REDSHIFT_DBNAME") == "" is TRUE (4):
'test-codesFrom.R:131:3', 'test-dbms.R:5:3', 'test-findUnmappedCodes.R:3:3',
'test-summariseCodeUse.R:492:3'
• Sys.getenv("CDM5_SQL_SERVER_SERVER") == "" is TRUE (1):
'test-codesInUse.R:36:3'
• Sys.getenv("SNOWFLAKE_SERVER") == "" is TRUE (1): 'test-dbms.R:154:3'
• Sys.getenv("darwinDbDatabaseServer") == "" is TRUE (1):
'test-synthea_sql_server.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-tableAchillesCodeUse.R:70:3'): table achilles code use expcted columns ──
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `visOmopResults::fxTable(x, delim = .options$delim, style = .options$style,
na = .options$na, title = .options$title, subtitle = .options$subtitle,
caption = .options$caption, groupColumn = newGroupcolumn,
groupAsColumn = .options$groupAsColumn, groupOrder = .options$groupOrder,
colsToMergeRows = .options$colsToMergeRows)`: The package "flextable" is required.
Backtrace:
▆
1. └─CodelistGenerator::tableAchillesCodeUse(...) at test-tableAchillesCodeUse.R:70:3
2. └─CodelistGenerator:::internalTableAchillesResult(...)
3. └─visOmopResults::visOmopTable(...)
4. └─visOmopResults::fxTable(...)
5. └─rlang::check_installed("flextable")
── Error ('test-tableCodeUse.R:106:3'): table code use expcted columns ─────────
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `visOmopResults::fxTable(x, delim = .options$delim, style = .options$style,
na = .options$na, title = .options$title, subtitle = .options$subtitle,
caption = .options$caption, groupColumn = newGroupcolumn,
groupAsColumn = .options$groupAsColumn, groupOrder = .options$groupOrder,
colsToMergeRows = .options$colsToMergeRows)`: The package "flextable" is required.
Backtrace:
▆
1. └─CodelistGenerator::tableCohortCodeUse(...) at test-tableCodeUse.R:106:3
2. └─CodelistGenerator:::internalTableCodeUse(...)
3. └─visOmopResults::visOmopTable(...)
4. └─visOmopResults::fxTable(...)
5. └─rlang::check_installed("flextable")
── Error ('test-tableCodeUse.R:262:3'): table code use output formats ──────────
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `visOmopResults::fxTable(x, delim = .options$delim, style = .options$style,
na = .options$na, title = .options$title, subtitle = .options$subtitle,
caption = .options$caption, groupColumn = newGroupcolumn,
groupAsColumn = .options$groupAsColumn, groupOrder = .options$groupOrder,
colsToMergeRows = .options$colsToMergeRows)`: The package "flextable" is required.
Backtrace:
▆
1. └─CodelistGenerator::tableCodeUse(...) at test-tableCodeUse.R:262:3
2. └─CodelistGenerator:::internalTableCodeUse(...)
3. └─visOmopResults::visOmopTable(...)
4. └─visOmopResults::fxTable(...)
5. └─rlang::check_installed("flextable")
[ FAIL 3 | WARN 662 | SKIP 14 | PASS 395 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 3.1.0
Check: package dependencies
Result: ERROR
Package required and available but unsuitable version: ‘omopgenerics’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64