CRAN Package Check Results for Package BacArena

Last updated on 2021-07-30 07:50:01 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.8.2 OK
r-devel-linux-x86_64-debian-gcc 1.8.2 68.79 262.48 331.27 OK
r-devel-linux-x86_64-fedora-clang 1.8.2 564.89 NOTE
r-devel-linux-x86_64-fedora-gcc 1.8.2 538.30 NOTE
r-devel-windows-x86_64 1.8.2 96.00 391.00 487.00 NOTE
r-devel-windows-x86_64-gcc10-UCRT 1.8.2 NOTE
r-patched-linux-x86_64 1.8.2 OK
r-patched-solaris-x86 1.8.2 678.20 NOTE
r-release-linux-x86_64 1.8.2 80.73 332.22 412.95 OK
r-release-macos-arm64 1.8.2 WARN
r-release-macos-x86_64 1.8.2 NOTE
r-release-windows-ix86+x86_64 1.8.2 213.00 578.00 791.00 NOTE
r-oldrel-macos-x86_64 1.8.2 NOTE
r-oldrel-windows-ix86+x86_64 1.8.2 144.00 595.00 739.00 NOTE

Check Details

Version: 1.8.2
Check: installed package size
Result: NOTE
     installed size is 8.2Mb
     sub-directories of 1Mb or more:
     R 1.2Mb
     data 3.3Mb
     libs 3.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.8.2
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘glpkAPI’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.8.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘BacArena-Introduction.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Loading required package: sybil
    Loading required package: Matrix
    Loading required package: lattice
    Loading required package: ReacTran
    Loading required package: rootSolve
    Loading required package: deSolve
    Loading required package: shape
    BacArena paper: https://doi.org/10.1371/journal.pcbi.1005544
     Tutorials: https://bacarena.github.io
     Model import from SBML: https://github.com/euba/BacArena/wiki/Model-import
     Development and help: https://github.com/euba/bacarena
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    Warning in simEnv(arena, time = 10) :
     If growth is limited by maximum weight for an organism (max_weight=TRUE) it is recommended to use minimize total flux (sec_obj='mtf').
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    Warning in doTryCatch(return(expr), name, parentenv, handler) :
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    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Warning in doTryCatch(return(expr), name, parentenv, handler) :
     no font could be found for family "Arial"
    Quitting from lines 149-153 (BacArena-Introduction.Rmd)
    Error: processing vignette 'BacArena-Introduction.Rmd' failed with diagnostics:
    polygon edge not found
    --- failed re-building ‘BacArena-Introduction.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘BacArena-Introduction.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-arm64