poppr: Genetic Analysis of Populations with Mixed Reproduction

Population genetic analyses for hierarchical analysis of partially clonal populations built upon the architecture of the 'adegenet' package. Originally described in Kamvar, Tabima, and Grünwald (2014) <doi:10.7717/peerj.281> with version 2.0 described in Kamvar, Brooks, and Grünwald (2015) <doi:10.3389/fgene.2015.00208>.

Version: 2.8.3
Depends: R (≥ 2.15.1), adegenet (≥ 2.0.0)
Imports: stats, graphics, grDevices, utils, vegan, ggplot2, phangorn, ape (≥ 3.1-1), igraph (≥ 1.0.0), methods, ade4, pegas, polysat, dplyr (≥ 0.4), rlang, boot, shiny, magrittr
Suggests: testthat, knitr, rmarkdown, poweRlaw, cowplot, RClone
Published: 2019-06-18
Author: Zhian N. Kamvar ORCID iD [cre, aut], Javier F. Tabima ORCID iD [aut], Sydney E. Everhart ORCID iD [ctb, dtc], Jonah C. Brooks [aut], Stacy A. Krueger-Hadfield ORCID iD [ctb], Erik Sotka [ctb], Brian J. Knaus ORCID iD [ctb], Patrick G. Meirmans ORCID iD [ctb], Frédéric D. Chevalier ORCID iD [ctb], Niklaus J. Grünwald ORCID iD [ths]
Maintainer: Zhian N. Kamvar <zkamvar at gmail.com>
BugReports: https://github.com/grunwaldlab/poppr/issues
License: GPL-2 | GPL-3
URL: https://grunwaldlab.github.io/poppr, https://github.com/grunwaldlab/poppr, https://grunwaldlab.github.io/Population_Genetics_in_R/
NeedsCompilation: yes
Citation: poppr citation info
Materials: README
CRAN checks: poppr results

Downloads:

Reference manual: poppr.pdf
Vignettes: Multilocus Genotype Analysis
Data Import and Manipulation
Algorightms and Equations
Package source: poppr_2.8.3.tar.gz
Windows binaries: r-devel: poppr_2.8.2.zip, r-release: poppr_2.8.2.zip, r-oldrel: poppr_2.8.2.zip
OS X binaries: r-release: poppr_2.8.2.tgz, r-oldrel: poppr_2.8.2.tgz
Old sources: poppr archive

Reverse dependencies:

Reverse depends: popprxl
Reverse suggests: adegenet, vcfR

Linking:

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