TROM: Transcriptome Overlap Measure

A new bioinformatic tool for comparing transcriptomes of two biological samples from the same or different species. The mapping is conducted based on the overlap of the associated genes of different samples. More examples and detailed explanations are available in the vignette. For detailed description of the method, please refer to Li, Wei Vivian, Yiling Chen, and Jingyi Jessica Li. "TROM: A testing-based method for finding transcriptomic similarity of biological samples." Statistics in biosciences 9.1 (2017): 105-136 <doi:10.1007/s12561-016-9163-y>.

Version: 1.3
Depends: R (≥ 3.1.0), lattice, methods
Imports: AnnotationDbi, openxlsx, GO.db, gtools, RColorBrewer, gplots, topGO
Published: 2018-07-02
Author: Jingyi Jessica Li, Wei Vivian Li
Maintainer: Jingyi Jessica Li <jli at stat.ucla.edu>
License: GPL-2
URL: http://www.stat.ucla.edu/~jingyi.li/software-and-data/trom.html, http://www.stat.ucla.edu/~jingyi.li/packages/TROM/vignette.pdf
NeedsCompilation: no
CRAN checks: TROM results

Downloads:

Reference manual: TROM.pdf
Package source: TROM_1.3.tar.gz
Windows binaries: r-devel: TROM_1.3.zip, r-release: TROM_1.3.zip, r-oldrel: TROM_1.3.zip
OS X binaries: r-release: TROM_1.3.tgz, r-oldrel: not available
Old sources: TROM archive

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