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SAVER 1.1.1

SAVER (Single-cell Analysis Via Expression Recovery) implements a regularized regression prediction and empirical Bayes method to recover the true gene expression profile in noisy and sparse single-cell RNA-seq data.

Installation

You can install the most recent updates of SAVER from github with:

# install.packages("devtools")
devtools::install_github("mohuangx/SAVER")

To install the stable release of SAVER:

# install.packages("devtools")
devtools::install_github("mohuangx/SAVER@*release")

Reference

For more information about the method, check out the website, tutorial, and paper.