Rphylopars: Phylogenetic Comparative Tools for Missing Data and Within-Species Variation

Tools for performing phylogenetic comparative methods for datasets with with multiple observations per species (intraspecific variation or measurement error) and/or missing data (Goolsby et al. 2017). Performs ancestral state reconstruction and missing data imputation on the estimated evolutionary model, which can be specified as Brownian Motion, Ornstein-Uhlenbeck, Early-Burst, Pagel's lambda, kappa, or delta, or a star phylogeny.

Version: 0.3.2
Depends: ape
Imports: Rcpp, doBy, geiger, phylolm, phytools, Matrix, MASS
LinkingTo: Rcpp, RcppArmadillo
Published: 2021-02-06
Author: Eric W. Goolsby [aut, cre], Jorn Bruggeman [aut], Cecile Ane [aut]
Maintainer: Eric W. Goolsby <eric.goolsby.evolution at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://github.com/ericgoolsby/Rphylopars/wiki
NeedsCompilation: yes
Materials: README
CRAN checks: Rphylopars results

Downloads:

Reference manual: Rphylopars.pdf
Package source: Rphylopars_0.3.2.tar.gz
Windows binaries: r-devel: Rphylopars_0.3.2.zip, r-devel-UCRT: Rphylopars_0.3.2.zip, r-release: Rphylopars_0.3.2.zip, r-oldrel: Rphylopars_0.3.2.zip
macOS binaries: r-release: Rphylopars_0.3.2.tgz, r-oldrel: Rphylopars_0.3.2.tgz
Old sources: Rphylopars archive

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