CRAN Package Check Results for Package fastqcr

Last updated on 2018-12-13 23:49:37 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.1 3.42 37.04 40.46 ERROR
r-devel-linux-x86_64-debian-gcc 0.1.1 2.96 28.83 31.79 ERROR
r-devel-linux-x86_64-fedora-clang 0.1.1 47.48 ERROR
r-devel-linux-x86_64-fedora-gcc 0.1.1 29.15 ERROR
r-devel-windows-ix86+x86_64 0.1.1 9.00 71.00 80.00 ERROR
r-patched-linux-x86_64 0.1.1 2.85 34.62 37.47 ERROR
r-patched-solaris-x86 0.1.1 62.30 ERROR
r-release-linux-x86_64 0.1.1 3.28 34.74 38.02 ERROR
r-release-windows-ix86+x86_64 0.1.1 9.00 67.00 76.00 ERROR
r-release-osx-x86_64 0.1.1 OK
r-oldrel-windows-ix86+x86_64 0.1.1 6.00 66.00 72.00 OK
r-oldrel-osx-x86_64 0.1.1 OK

Check Details

Version: 0.1.1
Check: examples
Result: ERROR
    Running examples in ‘fastqcr-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: qc_aggregate
    > ### Title: Aggregate FastQC Reports for Multiple Samples
    > ### Aliases: qc_aggregate summary.qc_aggregate qc_stats
    >
    > ### ** Examples
    >
    > # Demo QC dir
    > qc.dir <- system.file("fastqc_results", package = "fastqcr")
    > qc.dir
    [1] "/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/fastqcr/fastqc_results"
    >
    > # List of files in the directory
    > list.files(qc.dir)
    [1] "S1_fastqc.zip" "S2_fastqc.zip" "S3_fastqc.zip" "S4_fastqc.zip"
    [5] "S5_fastqc.zip"
    >
    > # Aggregate the report
    > qc <- qc_aggregate(qc.dir, progressbar = FALSE)
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Error in .f(.x[[i]], ...) : object 'module' not found
    Calls: qc_aggregate ... <Anonymous> -> vars_select_eval -> map_if -> map -> .f
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.1
Check: examples
Result: ERROR
    Running examples in ‘fastqcr-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: qc_aggregate
    > ### Title: Aggregate FastQC Reports for Multiple Samples
    > ### Aliases: qc_aggregate summary.qc_aggregate qc_stats
    >
    > ### ** Examples
    >
    > # Demo QC dir
    > qc.dir <- system.file("fastqc_results", package = "fastqcr")
    > qc.dir
    [1] "/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/fastqcr/fastqc_results"
    >
    > # List of files in the directory
    > list.files(qc.dir)
    [1] "S1_fastqc.zip" "S2_fastqc.zip" "S3_fastqc.zip" "S4_fastqc.zip"
    [5] "S5_fastqc.zip"
    >
    > # Aggregate the report
    > qc <- qc_aggregate(qc.dir, progressbar = FALSE)
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Error in .f(.x[[i]], ...) : object 'module' not found
    Calls: qc_aggregate ... <Anonymous> -> vars_select_eval -> map_if -> map -> .f
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.1
Check: examples
Result: ERROR
    Running examples in ‘fastqcr-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: qc_aggregate
    > ### Title: Aggregate FastQC Reports for Multiple Samples
    > ### Aliases: qc_aggregate summary.qc_aggregate qc_stats
    >
    > ### ** Examples
    >
    > # Demo QC dir
    > qc.dir <- system.file("fastqc_results", package = "fastqcr")
    > qc.dir
    [1] "/data/gannet/ripley/R/packages/tests-clang/fastqcr.Rcheck/fastqcr/fastqc_results"
    >
    > # List of files in the directory
    > list.files(qc.dir)
    [1] "S1_fastqc.zip" "S2_fastqc.zip" "S3_fastqc.zip" "S4_fastqc.zip"
    [5] "S5_fastqc.zip"
    >
    > # Aggregate the report
    > qc <- qc_aggregate(qc.dir, progressbar = FALSE)
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Error in .f(.x[[i]], ...) : object 'module' not found
    Calls: qc_aggregate ... <Anonymous> -> vars_select_eval -> map_if -> map -> .f
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1.1
Check: examples
Result: ERROR
    Running examples in ‘fastqcr-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: qc_aggregate
    > ### Title: Aggregate FastQC Reports for Multiple Samples
    > ### Aliases: qc_aggregate summary.qc_aggregate qc_stats
    >
    > ### ** Examples
    >
    > # Demo QC dir
    > qc.dir <- system.file("fastqc_results", package = "fastqcr")
    > qc.dir
    [1] "/data/gannet/ripley/R/packages/tests-devel/fastqcr.Rcheck/fastqcr/fastqc_results"
    >
    > # List of files in the directory
    > list.files(qc.dir)
    [1] "S1_fastqc.zip" "S2_fastqc.zip" "S3_fastqc.zip" "S4_fastqc.zip"
    [5] "S5_fastqc.zip"
    >
    > # Aggregate the report
    > qc <- qc_aggregate(qc.dir, progressbar = FALSE)
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Error in .f(.x[[i]], ...) : object 'module' not found
    Calls: qc_aggregate ... <Anonymous> -> vars_select_eval -> map_if -> map -> .f
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.1.1
Check: examples
Result: ERROR
    Running examples in 'fastqcr-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: qc_aggregate
    > ### Title: Aggregate FastQC Reports for Multiple Samples
    > ### Aliases: qc_aggregate summary.qc_aggregate qc_stats
    >
    > ### ** Examples
    >
    > # Demo QC dir
    > qc.dir <- system.file("fastqc_results", package = "fastqcr")
    > qc.dir
    [1] "D:/temp/Rtmpe2lA1u/RLIBS_a60417636375/fastqcr/fastqc_results"
    >
    > # List of files in the directory
    > list.files(qc.dir)
    [1] "S1_fastqc.zip" "S2_fastqc.zip" "S3_fastqc.zip" "S4_fastqc.zip"
    [5] "S5_fastqc.zip"
    >
    > # Aggregate the report
    > qc <- qc_aggregate(qc.dir, progressbar = FALSE)
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Error in .f(.x[[i]], ...) : object 'module' not found
    Calls: qc_aggregate ... <Anonymous> -> vars_select_eval -> map_if -> map -> .f
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.1.1
Check: examples
Result: ERROR
    Running examples in ‘fastqcr-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: qc_aggregate
    > ### Title: Aggregate FastQC Reports for Multiple Samples
    > ### Aliases: qc_aggregate summary.qc_aggregate qc_stats
    >
    > ### ** Examples
    >
    > # Demo QC dir
    > qc.dir <- system.file("fastqc_results", package = "fastqcr")
    > qc.dir
    [1] "/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/fastqcr/fastqc_results"
    >
    > # List of files in the directory
    > list.files(qc.dir)
    [1] "S1_fastqc.zip" "S2_fastqc.zip" "S3_fastqc.zip" "S4_fastqc.zip"
    [5] "S5_fastqc.zip"
    >
    > # Aggregate the report
    > qc <- qc_aggregate(qc.dir, progressbar = FALSE)
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Error in .f(.x[[i]], ...) : object 'module' not found
    Calls: qc_aggregate ... <Anonymous> -> vars_select_eval -> map_if -> map -> .f
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.1.1
Check: examples
Result: ERROR
    Running examples in ‘fastqcr-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: qc_aggregate
    > ### Title: Aggregate FastQC Reports for Multiple Samples
    > ### Aliases: qc_aggregate summary.qc_aggregate qc_stats
    >
    > ### ** Examples
    >
    > # Demo QC dir
    > qc.dir <- system.file("fastqc_results", package = "fastqcr")
    > qc.dir
    [1] "/home/ripley/R/Lib32/fastqcr/fastqc_results"
    >
    > # List of files in the directory
    > list.files(qc.dir)
    [1] "S1_fastqc.zip" "S2_fastqc.zip" "S3_fastqc.zip" "S4_fastqc.zip"
    [5] "S5_fastqc.zip"
    >
    > # Aggregate the report
    > qc <- qc_aggregate(qc.dir, progressbar = FALSE)
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Error in .f(.x[[i]], ...) : object 'module' not found
    Calls: qc_aggregate ... <Anonymous> -> vars_select_eval -> map_if -> map -> .f
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.1
Check: examples
Result: ERROR
    Running examples in ‘fastqcr-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: qc_aggregate
    > ### Title: Aggregate FastQC Reports for Multiple Samples
    > ### Aliases: qc_aggregate summary.qc_aggregate qc_stats
    >
    > ### ** Examples
    >
    > # Demo QC dir
    > qc.dir <- system.file("fastqc_results", package = "fastqcr")
    > qc.dir
    [1] "/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/fastqcr/fastqc_results"
    >
    > # List of files in the directory
    > list.files(qc.dir)
    [1] "S1_fastqc.zip" "S2_fastqc.zip" "S3_fastqc.zip" "S4_fastqc.zip"
    [5] "S5_fastqc.zip"
    >
    > # Aggregate the report
    > qc <- qc_aggregate(qc.dir, progressbar = FALSE)
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Error in .f(.x[[i]], ...) : object 'module' not found
    Calls: qc_aggregate ... <Anonymous> -> vars_select_eval -> map_if -> map -> .f
    Execution halted
Flavor: r-release-linux-x86_64

Version: 0.1.1
Check: examples
Result: ERROR
    Running examples in 'fastqcr-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: qc_aggregate
    > ### Title: Aggregate FastQC Reports for Multiple Samples
    > ### Aliases: qc_aggregate summary.qc_aggregate qc_stats
    >
    > ### ** Examples
    >
    > # Demo QC dir
    > qc.dir <- system.file("fastqc_results", package = "fastqcr")
    > qc.dir
    [1] "D:/temp/RtmpmAmZ2X/RLIBS_230303553345b/fastqcr/fastqc_results"
    >
    > # List of files in the directory
    > list.files(qc.dir)
    [1] "S1_fastqc.zip" "S2_fastqc.zip" "S3_fastqc.zip" "S4_fastqc.zip"
    [5] "S5_fastqc.zip"
    >
    > # Aggregate the report
    > qc <- qc_aggregate(qc.dir, progressbar = FALSE)
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Warning: 13 parsing failures.
    row col expected actual file
     1 -- 1 columns 3 columns literal data
     2 -- 1 columns 3 columns literal data
     3 -- 1 columns 3 columns literal data
     4 -- 1 columns 3 columns literal data
     5 -- 1 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning: 17 parsing failures.
    row col expected actual file
     1 -- 2 columns 3 columns literal data
     2 -- 2 columns 3 columns literal data
     3 -- 2 columns 3 columns literal data
     4 -- 2 columns 3 columns literal data
     5 -- 2 columns 3 columns literal data
    ... ... ......... ......... ............
    See problems(...) for more details.
    
    Warning in function_list[[i]](value) : NAs introduced by coercion
    Error in .f(.x[[i]], ...) : object 'module' not found
    Calls: qc_aggregate ... <Anonymous> -> vars_select_eval -> map_if -> map -> .f
    Execution halted
Flavor: r-release-windows-ix86+x86_64